統(tǒng)計(jì)物理和蛋白質(zhì)折疊講義（英文影印版）

Contents
Foreword
Introduction
1. Entropy
　1.1 Statistical Ensembles
　1.2 Microcanonical Ensemble and Entropy
　1.3 Thermodynamics
　1.4 Principle of Maximum Entropy
　1.5 Example: Defects in Solid
2. Maxwell-Boltzmann Distribution
　2.1 Classical Gas of Atoms
　2.2 The Most Probable Distribution
　2.3 The Distribution Function
　2.4 Thermodynamic Properties
3. Free Energy
　3.1 Canonical Ensemble
　3.2 Energy Fluctuations
　3.3 The Free Energy
　3.4 Maxwell's Relations
　3.5 Example: Unwinding of DNA
4. Chemical Potential
　4.1 Changing the Particle Number
　4.2 Grand Canonical Ensemble
　4.3 Thermodynamics
　4.4 Critical Fluctuations
　4.5 Example: Ideal Gas
5. Phase Transitions
　5.1 First-Order Phase Transitions
　5.2 Second-Order Phase Transitions
　5.3 Van der Waals Equation of State
　5.4 Maxwell Construction
6. Kinetics of Phase Transitions
　6.1 Nucleation and Spinodal Decomposition
　6.2 The Freezing of Water
7. The Order Parameter
　7 1 Ginsburg-Landau Theory
　7.2 Second-Order Phase Transition
　7.3 First-Order Phase Transition
　7.4 Cahn-Hilliard Equation
8. Correlation Function
　8.1 Correlation Length
　8.2 Large-Distance Correlations
　8.3 Universality Classes
　8.4 Compactness Index
　8.5 Scaling Properties
9. Stochastic Processes
　9.1 Brownian Motion
　9.2 Random Walk
　9.3 Diffusion
　9.4 Central Limit Theorem
　9.5 Diffusion Equation
10. Langevin Equation
　10.1 The Equation
　10.2 Solution
　10.3 Fluctuation-Dissipation Theorem
　10.4 Power Spectrum and Correlation
　10.5 Causality
　10.6 Energy Balance
11. The Life Process
　11.1 Life
　11.2 Cell Structure
　11.3 Molecular Interactions
　11.4 Primary Protein Structure
　11.5 Secondary Protein Structure
　11.6 Tertiary Protein Structure
　11.7 Denatured State of Protein
12. Self-Assembly
　12.1 Hydrophobic Effect
　12.2 Micelles and Bilayers
　12.3 Cell Membrane
　12.4 Kinetics of Self-Assembly
　12.5 Kinetic Arrest
13. Kinetics of Protein Folding
　13.1 The Statistical View
　13.2 Denatured State
　13.3 Molten Globule
　13.4 Folding Funnel
　13.5 Convergent Evolution
14. Power Laws in Protein Folding
　14.1 The Universal Range
　14.2 Collapse and Annealing
　14.3 Self-Avoiding Walk (SAW)
15. Self-Avoiding Walk and Turbulence
　15.1 Kolmogorov's Law
　15.2 Vortex Model
　15.3 Quantum Turbulence
　15.4 Convergent Evolution in Turbulence
16. Convergent Evolution in Protein Folding
　16.1 Mechanism of Convergent Evolution
　16.2 Energy Cascade in Turbulence
　16.3 Energy Cascade in the Polymer Chain
　16.4 Energy Cascade in the Molten Globule
　16.5 Secondary and Tertiary Structures
A. Model of Energy Cascade in a Protein Molecule
　A.1 Brownian Motion of a Forced Harmonic Oscillator
　A.2 Coupled Oscillators
　　A.2.1 Equations of Motion
　　A.2.2 Energy Balance
　　A.2.3 Fluctuation-Dissipation Theorem
　　A.2.4 Perturbation Theory
　　A.2.5 Weak-Damping Approximation
　A.3 Model of Protein Dynamics
　A.4 Fluctuation-Dissipation Theorem
　A.5 The Cascade Time
　A.6 Numerical Example
Index